siibra.livequeries.bigbrain

Matches BigBrain intesity profiles extracted by Wagstyl et al. to volumes.

Classes

BigBrainProfileQuery	Helper class that provides a standard way to create an ABC using
LayerwiseBigBrainIntensityQuery	Helper class that provides a standard way to create an ABC using
WagstylProfileLoader

Module Contents

class siibra.livequeries.bigbrain.BigBrainProfileQuery

Helper class that provides a standard way to create an ABC using inheritance.

query(regionobj: siibra.core.region.Region, **kwargs) → List[siibra.features.tabular.bigbrain_intensity_profile.BigBrainIntensityProfile]

class siibra.livequeries.bigbrain.LayerwiseBigBrainIntensityQuery

Helper class that provides a standard way to create an ABC using inheritance.

query(regionobj: siibra.core.region.Region, **kwargs) → List[siibra.features.tabular.layerwise_bigbrain_intensities.LayerwiseBigBrainIntensities]

class siibra.livequeries.bigbrain.WagstylProfileLoader

match(regionobj: siibra.core.region.Region, space: str = None)

Retrieve BigBrainIntesityProfiles .

Parameters:

• regionobj (region.Region) – Region or parcellation

• space (str, optional) – The space in which the region masks will be calculated. By default, siibra tries to fetch in BigBrain first and then the other spaces.

Returns:

tuple of profiles, boundary depths, and vertices

Return type:

tuple

DATASET

MESH_FILE_LEFT = 'data/gray_left_327680.surf.gii'

PROFILES_FILE_LEFT = 'data/profiles_left.npy'

REPO = 'https://github.com/kwagstyl/cortical_layers_tutorial/raw/main'

THICKNESSES_FILE_LEFT = 'data/thicknesses_left.npy'

property profile_labels