siibra.locations.pointset
A set of coordinates on a reference space.
Classes
A set of 3D points in the same reference space, |
Module Contents
- class siibra.locations.pointset.PointSet(coordinates, space=None, sigma_mm=0)
A set of 3D points in the same reference space, defined by a list of coordinates.
- as_list()
Return the point set as a list of 3D tuples.
- intersection(other: siibra.locations.location.Location | nibabel.Nifti1Image)
Return the subset of points that are inside the given mask.
NOTE: The affine matrix of the image must be set to warp voxels coordinates into the reference space of this Bounding Box.
- intersects(other: siibra.locations.location.Location | nibabel.Nifti1Image)
Verifies wether this 3D location intersects the given mask.
NOTE: The affine matrix of the image must be set to warp voxels coordinates into the reference space of this Bounding Box.
- transform(affine: numpy.ndarray, space=None)
Returns a new PointSet obtained by transforming the coordinates of this one with the given affine matrix.
- Parameters:
affine (numpy 4x4 ndarray) – affine matrix
space (reference space (id, name, or Space)) – Target reference space which is reached after applying the transform. Note that the consistency of this cannot be checked and is up to the user.
- warp(space, chunksize=1000)
Creates a new point set by warping its points to another space
- property boundingbox
Return the bounding box of these points.
- property centroid
- property has_constant_sigma
- property homogeneous
Access the list of 3D point as an Nx4 array of homogeneous coorindates.
- property sigma
- property volume