siibra.features.tabular.gene_expression

Module Contents

Classes

GeneExpressions

A set gene expressions for different candidate genes

class siibra.features.tabular.gene_expression.GeneExpressions(levels: List[float], z_scores: List[float], genes: List[str], additional_columns: dict, anchor: siibra.features.anchor.AnatomicalAnchor, datasets: List = [DATASET])

A set gene expressions for different candidate genes measured inside a brain structure.

ALLEN_ATLAS_NOTIFICATION = Multiline-String

Show Value

"""
    For retrieving microarray data, siibra connects to the web API of
    the Allen Brain Atlas (© 2015 Allen Institute for Brain Science),
    available from https://brain-map.org/api/index.html. Any use of the
    microarray data needs to be in accordance with their terms of use,
    as specified at https://alleninstitute.org/legal/terms-use/.
    """

DATASET

DESCRIPTION = Multiline-String

Show Value

"""
    Gene expressions extracted from microarray data in the Allen Atlas.
    """

plot(*args, backend='matplotlib', **kwargs)

Create a box plot per gene.

Parameters:

• backend (str) – “matplotlib”, “plotly”, or others supported by pandas DataFrame plotting backend.

• **kwargs – Keyword arguments are passed on to the plot command.