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  • Getting started
  • Main concepts
  • Step-by-step guide
  • How to contribute
  • Acknowledgements
  • API Documentation
    • Siibra
    • Main Packages
      • siibra.commons
      • siibra.configuration
      • siibra.core
      • siibra.features
      • siibra.livequeries
      • siibra.locations
      • siibra.retrieval
      • siibra.vocabularies
      • siibra.volumes
    • Core Concepts
      • siibra.core.atlas
      • siibra.core.concept
      • siibra.core.parcellation
      • siibra.core.region
      • siibra.core.space
    • Volumes
      • siibra.volumes.gifti
      • siibra.volumes.neuroglancer
      • siibra.volumes.nifti
      • siibra.volumes.parcellationmap
      • siibra.volumes.sparsemap
      • siibra.volumes.volume
    • Features
      • siibra.features.anchor
      • siibra.features.connectivity
      • siibra.features.dataset
      • siibra.features.feature
      • siibra.features.image
      • siibra.features.tabular
    • Locations
      • siibra.locations.boundingbox
      • siibra.locations.location
      • siibra.locations.point
      • siibra.locations.pointset
    • Miscellaneous Helpers
      • Live queries
      • Retrieval
  • Guide for adding new data
  • Developer documentation
siibra-python
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  • API Documentation

API Documentation

Siibra

Main Packages

siibra.commons

Constants, functions, and classes used commonly across siibra.

siibra.configuration

siibra.core

Main siibra concepts

siibra.features

siibra.livequeries

siibra.locations

siibra.retrieval

siibra.vocabularies

siibra.volumes

Core Concepts

siibra.core.atlas

Provides reference systems for brains.

siibra.core.concept

Parent class to siibra main concepts.

siibra.core.parcellation

Hierarchal brain regions and metadata.

siibra.core.region

Representation of a brain region.

siibra.core.space

A particular brain reference space.

Volumes

siibra.volumes.gifti

siibra.volumes.neuroglancer

siibra.volumes.nifti

siibra.volumes.parcellationmap

Provides spatial representations for parcellations and regions.

siibra.volumes.sparsemap

Represents lists of probabilistic brain region maps.

siibra.volumes.volume

A specific mesh or 3D array.

Features

siibra.features.anchor

siibra.features.connectivity

siibra.features.dataset

siibra.features.feature

siibra.features.image

siibra.features.tabular

Locations

siibra.locations.boundingbox

siibra.locations.location

siibra.locations.point

siibra.locations.pointset

Miscellaneous Helpers

Live queries

siibra.livequeries.allen

siibra.livequeries.bigbrain

siibra.livequeries.ebrains

siibra.livequeries.query

Retrieval

siibra.retrieval.cache

siibra.retrieval.datasets

siibra.retrieval.exceptions

siibra.retrieval.repositories

siibra.retrieval.requests


© Copyright 2020-2023, Forschungszentrum Juelich GmbH. Revision 0079b3c4.

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