siibra.livequeries.allen
Query Allen Human Brain Atlas microarray data in specified volume.
Attributes
Exceptions
Common base class for all non-exit exceptions. |
Classes
Interface to Allen Human Brain Atlas microarray data. |
Functions
Module Contents
- exception siibra.livequeries.allen.InvalidAllenAPIResponseException
Common base class for all non-exit exceptions.
- class siibra.livequeries.allen.AllenBrainAtlasQuery(**kwargs)
Interface to Allen Human Brain Atlas microarray data.
This class connects to the web API of the Allen Brain Atlas: © 2015 Allen Institute for Brain Science. Allen Brain Atlas API. Available from: brain-map.org/api/index.html Any use of the data needs to be in accordance with their terms of use, see https://alleninstitute.org/legal/terms-use/
We have samples from 6 different human donors.
Each donor corresponds to exactly 1 specimen (tissue used for study)
Each sample was subject to multiple (in fact 4) different probes.
The probe data structures contain the list of gene expression of a particular gene measured in each sample. Therefore the length of the gene expression list in a probe corresponds to the number of samples taken in the corresponding donor for the given gene.
- __iter__()
- query(concept: siibra.core.structure.BrainStructure) List[siibra.features.tabular.gene_expression.GeneExpressions]
- factors = None
- genes
- species = 'homo sapiens'
- siibra.livequeries.allen.is_allen_api_microarray_service_available()
- siibra.livequeries.allen.BASE_URL = 'http://api.brain-map.org/api/v2/data'
- siibra.livequeries.allen.LOCATION_PRECISION_MM = 2.0