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siibra-python documentation - Home
  • Installation and Help
  • Glossary
  • Examples
    • Atlases and brain parcellations
      • Selecting a preconfigured atlas from an instance table
      • Selecting preconfigured parcellations
      • Explore brain region hierarchies
      • Find brain regions in a parcellation
      • Basic brain region properties
      • Spatial properties of brain regions
    • Maps and templates
      • Find predefined reference spaces
      • Accessing brain reference templates
      • Accessing parcellation maps
      • Access BigBrain high-resolution data
      • Access parcellation maps in surface space
      • Access to Big Brain cortical layer meshes
      • Adding a custom parcellation map
    • Multimodal data features
      • Understanding links between data features and anatomical locations
      • Neurotransmitter receptor densities
      • Colorizing a map with neurotransmitter receptor densities
      • Cortical cell body distributions
      • Gene expressions
      • EBRAINS regional datasets
      • Connectivity matrices
      • Comparative analysis of brain organisation in two brain regions
      • Parcellation-based functional data
      • Compound features
    • Locations in reference spaces
      • Utilizing locations of interest
    • Anatomical assignment
      • Assigning coordinates to brain regions
      • Assign modes in activation maps to brain regions
    • Tutorials
      • Anatomical characterization and multimodal profiling of regions of interest
      • Multimodal comparison of two cortical brain areas
      • Anatomically guided reproducible extraction of full resolution image data from cloud resources
  • How to cite
  • API References
  • FAQ
  • How to cite

Development

  • Working with your data
  • Developer documentation
  • How to contribute
  • GitHub Repository
  • .rst

siibra.core

Contents

  • Submodules

siibra.core

Core concepts behind siibra, see glossary for details.

Submodules

  • siibra.core.assignment
  • siibra.core.atlas
  • siibra.core.concept
  • siibra.core.parcellation
  • siibra.core.region
  • siibra.core.space
  • siibra.core.structure
Contents
  • Submodules

By Big Data Analytics Group, Institute of Neuroscience and Medicine, Forschungszentrum Juelich GmbH

© Copyright 2020-2024, Forschungszentrum Juelich GmbH.

This software code is funded from the European Union’s Horizon 2020 Framework Programme for Research and Innovation under the Specific Grant Agreement No. 945539 (Human Brain Project SGA3).