siibra.features.anchor
Handles the relation between study targets and BrainStructures.
Module Contents
Classes
Anatomical anchor to an atlas region, a geometric primitive in an atlas |
- class siibra.features.anchor.AnatomicalAnchor(species: List[siibra.commons.Species] | siibra.commons.Species | str, location: siibra.locations.location.Location = None, region: str | siibra.core.region.Region = None)
Anatomical anchor to an atlas region, a geometric primitive in an atlas reference space, or both.
- property has_region_aliases: bool
- property last_match_description: str
- property last_match_result: List[siibra.core.assignment.AnatomicalAssignment]
- property location: siibra.locations.location.Location
- property parcellations: List[siibra.core.parcellation.Parcellation]
Return any parcellation objects that regions of this anchor belong to.
- property region_aliases
- property regions: Dict[siibra.core.region.Region, siibra.core.assignment.Qualification]
Return the list of regions associated with this anchor. Decode the self._regionspec string into region objects now, if applicable and called for the first time.
- property space: siibra.core.space.Space
- __add__(other: AnatomicalAnchor) AnatomicalAnchor
- __radd__(other) AnatomicalAnchor
- __str__()
Return str(self).
- assign(concept: siibra.core.structure.BrainStructure, restrict_space: bool = False) siibra.core.assignment.AnatomicalAssignment
Match this anchor to a query concept. Assignments are cached at runtime, so repeated assignment with the same concept will be cheap.
- matches(concept: siibra.core.structure.BrainStructure, restrict_space: bool = False) bool
- represented_parcellations() List[siibra.core.parcellation.Parcellation]
Return any parcellation objects that this anchor explicitly points to.