siibra.livequeries

Feature queries requiring live query or on-the-fly calculations.

Submodules

Classes

AllenBrainAtlasQuery

Interface to Allen Human Brain Atlas microarray data.

BigBrainProfileQuery

Helper class that provides a standard way to create an ABC using

EbrainsFeatureQuery

Helper class that provides a standard way to create an ABC using

LayerwiseBigBrainIntensityQuery

Helper class that provides a standard way to create an ABC using

Package Contents

class siibra.livequeries.AllenBrainAtlasQuery(**kwargs)
Inheritance diagram of siibra.livequeries.AllenBrainAtlasQuery

Interface to Allen Human Brain Atlas microarray data.

This class connects to the web API of the Allen Brain Atlas: © 2015 Allen Institute for Brain Science. Allen Brain Atlas API. Available from: brain-map.org/api/index.html Any use of the data needs to be in accordance with their terms of use, see https://alleninstitute.org/legal/terms-use/

  • We have samples from 6 different human donors.

  • Each donor corresponds to exactly 1 specimen (tissue used for study)

  • Each sample was subject to multiple (in fact 4) different probes.

  • The probe data structures contain the list of gene expression of a particular gene measured in each sample. Therefore the length of the gene expression list in a probe corresponds to the number of samples taken in the corresponding donor for the given gene.

__iter__()
query(concept: siibra.core.structure.BrainStructure) → List[siibra.features.tabular.gene_expression.GeneExpressions]
factors = None
genes
species = 'homo sapiens'
class siibra.livequeries.BigBrainProfileQuery
Inheritance diagram of siibra.livequeries.BigBrainProfileQuery

Helper class that provides a standard way to create an ABC using inheritance.

query(concept: siibra.core.structure.BrainStructure, **kwargs) → List[siibra.features.tabular.bigbrain_intensity_profile.BigBrainIntensityProfile]
class siibra.livequeries.EbrainsFeatureQuery(**kwargs)
Inheritance diagram of siibra.livequeries.EbrainsFeatureQuery

Helper class that provides a standard way to create an ABC using inheritance.

query(region: EbrainsFeatureQuery.query.region)
COMPACT_FEATURE_LIST = True
VERSION_PATTERN
loader
parcellation_ids = None
class siibra.livequeries.LayerwiseBigBrainIntensityQuery
Inheritance diagram of siibra.livequeries.LayerwiseBigBrainIntensityQuery

Helper class that provides a standard way to create an ABC using inheritance.

query(concept: siibra.core.structure.BrainStructure, **kwargs) → List[siibra.features.tabular.layerwise_bigbrain_intensities.LayerwiseBigBrainIntensities]