siibra.livequeries.bigbrain

Matches BigBrain intensity profiles extracted by Wagstyl et al. to volumes.

Classes

BigBrainProfileQuery

Helper class that provides a standard way to create an ABC using

LayerwiseBigBrainIntensityQuery

Helper class that provides a standard way to create an ABC using

WagstylProfileLoader

Module Contents

class siibra.livequeries.bigbrain.BigBrainProfileQuery
Inheritance diagram of siibra.livequeries.bigbrain.BigBrainProfileQuery

Helper class that provides a standard way to create an ABC using inheritance.

query(concept: siibra.core.structure.BrainStructure, **kwargs) List[siibra.features.tabular.bigbrain_intensity_profile.BigBrainIntensityProfile]
class siibra.livequeries.bigbrain.LayerwiseBigBrainIntensityQuery
Inheritance diagram of siibra.livequeries.bigbrain.LayerwiseBigBrainIntensityQuery

Helper class that provides a standard way to create an ABC using inheritance.

query(concept: siibra.core.structure.BrainStructure, **kwargs) List[siibra.features.tabular.layerwise_bigbrain_intensities.LayerwiseBigBrainIntensities]
class siibra.livequeries.bigbrain.WagstylProfileLoader
__len__()
DATASET
MESH_FILE_LEFT = 'data/gray_left_327680.surf.gii'
PROFILES_FILE_LEFT = 'data/profiles_left.npy'
REPO = 'https://github.com/kwagstyl/cortical_layers_tutorial/raw/main'
THICKNESSES_FILE_LEFT = 'data/thicknesses_left.npy'
property profile_labels