siibra.features.tabular.regional_timeseries_activity

Module Contents

Classes

RegionalBOLD	Blood-oxygen-level-dependent (BOLD) signals per region.
RegionalTimeseriesActivity	Datasets that provide regional activity over time.

class siibra.features.tabular.regional_timeseries_activity.RegionalBOLD(paradigm: str, **kwargs)

Blood-oxygen-level-dependent (BOLD) signals per region.

property name

Returns a short human-readable name of this feature.

class siibra.features.tabular.regional_timeseries_activity.RegionalTimeseriesActivity(cohort: str, modality: str, regions: list, connector: siibra.retrieval.repositories.RepositoryConnector, decode_func: Callable, filename: str, anchor: siibra.features.anchor.AnatomicalAnchor, timestep: str, description: str = '', datasets: list = [], subject: str = 'average', id: str = None)

Datasets that provide regional activity over time.

property data: pandas.DataFrame

Returns a table as a pandas dataframe where the index is a timeseries.

property name

Returns a short human-readable name of this feature.

property subject

Returns the subject identifiers for which the table represents.

__str__()

Return str(self).

compute_centroids(space)

Computes the list of centroid coordinates corresponding to dataframe columns, in the given reference space.

Parameters:

space (Space, str) –

Return type:

list[tuple(float, float, float)]

plot(regions: List[str | siibra.core.region.Region] = None, *args, backend='matplotlib', **kwargs)

Create a bar plot of averaged timeseries data per region.

Parameters:

• regions (List[str or Region]) –

• subject (str, default: None) – If None, returns the subject averaged table.

• kwargs (args and) – takes arguments and keyword arguments for the desired plotting backend.

plot_carpet(regions: List[str | siibra.core.region.Region] = None, *args, backend='plotly', **kwargs)

Create a carpet plot ofthe timeseries data per region.

Parameters:

• regions (List[str or Region]) –

• subject (str, default: None) – If None, returns the subject averaged table.

• kwargs (args and) – takes arguments and keyword arguments for plotly.express.imshow