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Getting started
Step-by-step guide
API Documentation
Guide for adding new data
Developer documentation
How to contribute
Acknowledgements
How to cite
siibra-python
Index
Index
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A
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B
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C
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D
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E
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F
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G
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H
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I
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J
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K
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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V
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W
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X
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Y
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Z
_
__add__() (siibra.features.anchor.AnatomicalAnchor method)
(siibra.locations.Point method)
(siibra.locations.point.Point method)
(siibra.Point method)
__contains__() (siibra.commons.InstanceTable method)
(siibra.core.region.Region method)
(siibra.core.structure.BrainStructure method)
(siibra.vocabularies.InstanceTable method)
__dir__() (in module siibra)
(in module siibra.features)
(in module siibra.features.connectivity)
(siibra.commons.InstanceTable method)
(siibra.features.feature.CompoundFeature method)
(siibra.vocabularies.InstanceTable method)
__enter__() (siibra.commons.LoggingContext method)
(siibra.volumes.providers.provider.SubvolumeProvider.UseCaching method)
__eq__() (siibra.commons.MapIndex method)
(siibra.core.parcellation.ParcellationVersion method)
(siibra.core.region.Region method)
(siibra.features.dataset.ebrains.EbrainsDataFeature method)
(siibra.features.dataset.EbrainsDataFeature method)
(siibra.locations.BoundingBox method)
(siibra.locations.boundingbox.BoundingBox method)
(siibra.locations.Location method)
(siibra.locations.location.Location method)
(siibra.locations.Point method)
(siibra.locations.point.Point method)
(siibra.locations.PointSet method)
(siibra.locations.pointset.PointSet method)
(siibra.MapIndex method)
(siibra.Point method)
(siibra.PointSet method)
(siibra.retrieval.datasets.EbrainsBaseDataset method)
(siibra.retrieval.datasets.GenericDataset method)
(siibra.retrieval.GitlabConnector method)
(siibra.retrieval.LocalFileRepository method)
(siibra.retrieval.repositories.GitlabConnector method)
(siibra.retrieval.repositories.LocalFileRepository method)
(siibra.retrieval.repositories.RepositoryConnector method)
(siibra.retrieval.repositories.ZipfileConnector method)
(siibra.retrieval.ZipfileConnector method)
(siibra.volumes.Volume method)
(siibra.volumes.volume.Volume method)
__exit__() (siibra.commons.LoggingContext method)
(siibra.volumes.providers.provider.SubvolumeProvider.UseCaching method)
__ge__() (siibra.locations.Point method)
(siibra.locations.point.Point method)
(siibra.Point method)
__getattr__() (in module siibra)
(in module siibra.features)
(siibra.commons.InstanceTable method)
(siibra.features.feature.CompoundFeature method)
(siibra.vocabularies.InstanceTable method)
(siibra.volumes.providers.provider.SubvolumeProvider method)
__getitem__() (siibra.commons.InstanceTable method)
(siibra.configuration.Configuration method)
(siibra.configuration.configuration.Configuration method)
(siibra.core.parcellation.Parcellation method)
(siibra.features.feature.CompoundFeature method)
(siibra.locations.Point method)
(siibra.locations.point.Point method)
(siibra.locations.PointSet method)
(siibra.locations.pointset.PointSet method)
(siibra.Point method)
(siibra.PointSet method)
(siibra.vocabularies.InstanceTable method)
__gt__() (siibra.core.concept.AtlasConcept method)
(siibra.locations.Point method)
(siibra.locations.point.Point method)
(siibra.Point method)
__hash__() (siibra.commons.MapIndex method)
(siibra.core.region.Region method)
(siibra.core.structure.BrainStructure method)
(siibra.features.dataset.ebrains.EbrainsDataFeature method)
(siibra.features.dataset.EbrainsDataFeature method)
(siibra.locations.BoundingBox method)
(siibra.locations.boundingbox.BoundingBox method)
(siibra.locations.Location method)
(siibra.locations.location.Location method)
(siibra.locations.Point method)
(siibra.locations.point.Point method)
(siibra.locations.PointSet method)
(siibra.locations.pointset.PointSet method)
(siibra.MapIndex method)
(siibra.Point method)
(siibra.PointSet method)
(siibra.retrieval.datasets.EbrainsBaseDataset method)
(siibra.retrieval.datasets.GenericDataset method)
(siibra.volumes.Volume method)
(siibra.volumes.volume.Volume method)
__init_subclass__() (siibra.core.concept.AtlasConcept class method)
(siibra.features.Feature class method)
(siibra.features.feature.Compoundable class method)
(siibra.features.feature.Feature class method)
(siibra.livequeries.query.LiveQuery class method)
(siibra.volumes.providers.provider.VolumeProvider class method)
__iter__() (siibra.commons.InstanceTable method)
(siibra.core.parcellation.ParcellationVersion method)
(siibra.core.region.Region method)
(siibra.features.feature.CompoundFeature method)
(siibra.livequeries.allen.AllenBrainAtlasQuery method)
(siibra.livequeries.AllenBrainAtlasQuery method)
(siibra.locations.BoundingBox method)
(siibra.locations.boundingbox.BoundingBox method)
(siibra.locations.Point method)
(siibra.locations.point.Point method)
(siibra.locations.PointSet method)
(siibra.locations.pointset.PointSet method)
(siibra.Point method)
(siibra.PointSet method)
(siibra.retrieval.cache.Cache method)
(siibra.vocabularies.InstanceTable method)
(siibra.volumes.Map method)
(siibra.volumes.parcellationmap.Map method)
__le__() (siibra.locations.Point method)
(siibra.locations.point.Point method)
(siibra.Point method)
__len__() (siibra.commons.InstanceTable method)
(siibra.features.connectivity.regional_connectivity.RegionalConnectivity method)
(siibra.features.feature.CompoundFeature method)
(siibra.livequeries.bigbrain.WagstylProfileLoader method)
(siibra.locations.Point method)
(siibra.locations.point.Point method)
(siibra.locations.PointSet method)
(siibra.locations.pointset.PointSet method)
(siibra.Point method)
(siibra.PointSet method)
(siibra.vocabularies.InstanceTable method)
(siibra.volumes.Map method)
(siibra.volumes.parcellationmap.Map method)
__lt__() (siibra.core.assignment.AnatomicalAssignment method)
(siibra.core.concept.AtlasConcept method)
(siibra.core.parcellation.Parcellation method)
(siibra.core.parcellation.ParcellationVersion method)
(siibra.locations.Point method)
(siibra.locations.point.Point method)
(siibra.Point method)
(siibra.volumes.providers.neuroglancer.NeuroglancerScale method)
__mul__() (siibra.locations.Point method)
(siibra.locations.point.Point method)
(siibra.Point method)
__radd__() (siibra.features.anchor.AnatomicalAnchor method)
__repr__() (siibra.commons.InstanceTable method)
(siibra.commons.MapIndex method)
(siibra.commons.Species method)
(siibra.core.assignment.Qualification method)
(siibra.core.concept.AtlasConcept method)
(siibra.core.parcellation.ParcellationVersion method)
(siibra.core.structure.BrainStructure method)
(siibra.locations.Location method)
(siibra.locations.location.Location method)
(siibra.locations.Point method)
(siibra.locations.point.Point method)
(siibra.MapIndex method)
(siibra.Point method)
(siibra.vocabularies.InstanceTable method)
(siibra.volumes.providers.neuroglancer.NeuroglancerScale method)
(siibra.volumes.Volume method)
(siibra.volumes.volume.Volume method)
__setitem__() (siibra.locations.Point method)
(siibra.locations.point.Point method)
(siibra.Point method)
__str__() (siibra.commons.InstanceTable method)
(siibra.commons.MapIndex method)
(siibra.commons.Species method)
(siibra.core.assignment.AnatomicalAssignment method)
(siibra.core.assignment.Qualification method)
(siibra.core.concept.AtlasConcept method)
(siibra.core.parcellation.ParcellationVersion method)
(siibra.features.anchor.AnatomicalAnchor method)
(siibra.features.connectivity.regional_connectivity.RegionalConnectivity method)
(siibra.features.image.image.ImageAnchor method)
(siibra.features.tabular.regional_timeseries_activity.RegionalTimeseriesActivity method)
(siibra.locations.BoundingBox method)
(siibra.locations.boundingbox.BoundingBox method)
(siibra.locations.Location method)
(siibra.locations.location.Location method)
(siibra.locations.PointSet method)
(siibra.locations.pointset.PointSet method)
(siibra.MapIndex method)
(siibra.PointSet method)
(siibra.retrieval.GitlabConnector method)
(siibra.retrieval.LocalFileRepository method)
(siibra.retrieval.repositories.GitlabConnector method)
(siibra.retrieval.repositories.LocalFileRepository method)
(siibra.retrieval.repositories.ZipfileConnector method)
(siibra.retrieval.requests.SiibraHttpRequestError method)
(siibra.retrieval.SiibraHttpRequestError method)
(siibra.retrieval.ZipfileConnector method)
(siibra.vocabularies.InstanceTable method)
(siibra.volumes.providers.neuroglancer.NeuroglancerScale method)
(siibra.volumes.Volume method)
(siibra.volumes.volume.Volume method)
__sub__() (siibra.commons.InstanceTable method)
(siibra.locations.Point method)
(siibra.locations.point.Point method)
(siibra.Point method)
(siibra.vocabularies.InstanceTable method)
__truediv__() (siibra.locations.Point method)
(siibra.locations.point.Point method)
(siibra.Point method)
__version__ (in module siibra)
(in module siibra.commons)
A
add() (siibra.commons.InstanceTable method)
(siibra.vocabularies.InstanceTable method)
add_img() (siibra.volumes.sparsemap.SparseIndex method)
affine (siibra.volumes.Map property)
(siibra.volumes.parcellationmap.Map property)
(siibra.volumes.providers.neuroglancer.NeuroglancerScale property)
(siibra.volumes.providers.neuroglancer.NeuroglancerVolume property)
(siibra.volumes.sparsemap.SparseMap property)
affine_scaling() (in module siibra.commons)
ALLEN_ATLAS_NOTIFICATION (siibra.features.tabular.gene_expression.GeneExpressions attribute)
(siibra.features.tabular.GeneExpressions attribute)
AllenBrainAtlasQuery (class in siibra.livequeries)
(class in siibra.livequeries.allen)
AnatomicalAnchor (class in siibra.features.anchor)
AnatomicalAssignment (class in siibra.core.assignment)
AnatomoFunctionalConnectivity (class in siibra.features.connectivity)
(class in siibra.features.connectivity.functional_connectivity)
anchor (siibra.features.Feature property)
(siibra.features.feature.Feature property)
anony_client (siibra.core.region.RegionRelationAssessments attribute)
api_version (siibra.retrieval.EbrainsHdgConnector attribute)
(siibra.retrieval.repositories.EbrainsHdgConnector attribute)
append_query_params() (in module siibra.explorer.url)
APPROXIMATE (siibra.core.assignment.Qualification attribute)
argmax_dim4() (in module siibra.commons)
as_list() (siibra.locations.PointSet method)
(siibra.locations.pointset.PointSet method)
(siibra.PointSet method)
assert_folder() (in module siibra.retrieval.cache)
assign() (siibra.core.region.Region method)
(siibra.core.structure.BrainStructure method)
(siibra.features.anchor.AnatomicalAnchor method)
(siibra.volumes.Map method)
(siibra.volumes.parcellationmap.Map method)
assign_layer() (siibra.features.tabular.cortical_profile.CorticalProfile method)
assigned_structure (siibra.core.assignment.AnatomicalAssignment attribute)
AssignImageResult (class in siibra.volumes.parcellationmap)
Atlas (class in siibra.core.atlas)
AtlasConcept (class in siibra.core.concept)
auth_headers (siibra.retrieval.EbrainsRequest property)
(siibra.retrieval.requests.EbrainsRequest property)
authors (siibra.core.concept.AtlasConcept property)
(siibra.features.Feature property)
(siibra.features.feature.Feature property)
(siibra.retrieval.EbrainsPublicDatasetConnector property)
(siibra.retrieval.repositories.EbrainsPublicDatasetConnector property)
B
BASE_URL (in module siibra.livequeries.allen)
base_url (siibra.retrieval.EbrainsHdgConnector attribute)
(siibra.retrieval.EbrainsPublicDatasetConnector attribute)
(siibra.retrieval.repositories.EbrainsHdgConnector attribute)
(siibra.retrieval.repositories.EbrainsPublicDatasetConnector attribute)
(siibra.retrieval.repositories.EbrainsPublicDatasetConnectorMinds attribute)
BIGBRAIN_ID (siibra.locations.Location attribute)
(siibra.locations.location.Location attribute)
bigbrain_section() (siibra.locations.Point method)
(siibra.locations.point.Point method)
(siibra.Point method)
BIGBRAIN_VOLUMETRIC_SHRINKAGE_FACTOR (siibra.features.tabular.cell_density_profile.CellDensityProfile attribute)
(siibra.features.tabular.CellDensityProfile attribute)
BigBrainIntensityProfile (class in siibra.features.tabular)
(class in siibra.features.tabular.bigbrain_intensity_profile)
BigBrainProfileQuery (class in siibra.livequeries)
(class in siibra.livequeries.bigbrain)
BlockfaceVolumeOfInterest (class in siibra.features.image)
(class in siibra.features.image.volume_of_interest)
BOUNDARIES (siibra.features.tabular.cortical_profile.CorticalProfile attribute)
boundaries_mapped (siibra.features.tabular.cortical_profile.CorticalProfile property)
boundary_annotation() (siibra.features.tabular.cell_density_profile.CellDensityProfile method)
(siibra.features.tabular.CellDensityProfile method)
boundary_positions (siibra.features.tabular.cell_density_profile.CellDensityProfile property)
(siibra.features.tabular.CellDensityProfile property)
(siibra.features.tabular.cortical_profile.CorticalProfile property)
bounding_box (siibra.explorer.url.DecodedUrl attribute)
BoundingBox (class in siibra.locations)
(class in siibra.locations.boundingbox)
boundingbox (siibra.locations.Point property)
(siibra.locations.point.Point property)
(siibra.locations.PointSet property)
(siibra.locations.pointset.PointSet property)
(siibra.Point property)
(siibra.PointSet property)
BrainStructure (class in siibra.core.structure)
branches (siibra.retrieval.GitlabConnector property)
(siibra.retrieval.repositories.GitlabConnector property)
build_activity_timeseries() (siibra.configuration.factory.Factory class method)
build_atlas() (siibra.configuration.factory.Factory class method)
build_cell_density_fingerprint() (siibra.configuration.factory.Factory class method)
build_cell_density_profile() (siibra.configuration.factory.Factory class method)
build_connectivity_matrix() (siibra.configuration.factory.Factory class method)
build_ebrains_dataset() (siibra.configuration.factory.Factory class method)
build_filename() (siibra.retrieval.cache.Cache method)
build_map() (siibra.configuration.factory.Factory class method)
build_objects() (siibra.configuration.Configuration method)
(siibra.configuration.configuration.Configuration method)
build_parcellation() (siibra.configuration.factory.Factory class method)
build_point() (siibra.configuration.factory.Factory class method)
build_pointset() (siibra.configuration.factory.Factory class method)
build_receptor_density_fingerprint() (siibra.configuration.factory.Factory class method)
build_receptor_density_profile() (siibra.configuration.factory.Factory class method)
build_region() (siibra.configuration.factory.Factory class method)
build_section() (siibra.configuration.factory.Factory class method)
build_space() (siibra.configuration.factory.Factory class method)
build_type() (in module siibra.configuration.factory)
build_volume() (siibra.configuration.factory.Factory class method)
build_volume_of_interest() (siibra.configuration.factory.Factory class method)
C
Cache (class in siibra.retrieval.cache)
cache (in module siibra)
CACHE (in module siibra.retrieval)
(in module siibra.retrieval.cache)
cached (siibra.retrieval.HttpRequest property)
(siibra.retrieval.repositories.ZipfileConnector.ZipFileLoader property)
(siibra.retrieval.requests.HttpRequest property)
(siibra.retrieval.ZipfileConnector.ZipFileLoader property)
category (siibra.features.Feature attribute)
(siibra.features.feature.Feature attribute)
CELL_READER() (siibra.features.tabular.cell_density_profile.CellDensityProfile class method)
(siibra.features.tabular.CellDensityProfile class method)
(siibra.features.tabular.layerwise_cell_density.LayerwiseCellDensity class method)
(siibra.features.tabular.LayerwiseCellDensity class method)
CellbodyStainedSection (class in siibra.features.image)
(class in siibra.features.image.sections)
CellBodyStainedVolumeOfInterest (class in siibra.features.image)
(class in siibra.features.image.volume_of_interest)
CellDensityProfile (class in siibra.features.tabular)
(class in siibra.features.tabular.cell_density_profile)
cells (siibra.features.tabular.cell_density_profile.CellDensityProfile property)
(siibra.features.tabular.CellDensityProfile property)
center (siibra.locations.BoundingBox property)
(siibra.locations.boundingbox.BoundingBox property)
centroid (siibra.core.region.SpatialPropCmpt attribute)
(siibra.locations.PointSet property)
(siibra.locations.pointset.PointSet property)
(siibra.PointSet property)
(siibra.volumes.parcellationmap.MapAssignment attribute)
ch (in module siibra.commons)
CHLOROCEBUS_AETHIOPS_SABAEUS (siibra.commons.Species attribute)
cipher (in module siibra.explorer.util)
citation (siibra.commons.TypePublication attribute)
(siibra.retrieval.EbrainsPublicDatasetConnector property)
(siibra.retrieval.repositories.EbrainsPublicDatasetConnector property)
clear() (siibra.retrieval.cache.Cache method)
clear_cache() (siibra.retrieval.repositories.ZipfileConnector method)
(siibra.retrieval.ZipfileConnector method)
clear_name() (in module siibra.commons)
clear_registry() (siibra.core.concept.AtlasConcept class method)
clip() (siibra.locations.BoundingBox method)
(siibra.locations.boundingbox.BoundingBox method)
cog (siibra.core.region.SpatialProp attribute)
color_warning_issued (siibra.volumes.providers.neuroglancer.NeuroglancerScale attribute)
colorize() (siibra.volumes.Map method)
(siibra.volumes.parcellationmap.Map method)
COMPACT_FEATURE_LIST (siibra.livequeries.ebrains.EbrainsFeatureQuery attribute)
(siibra.livequeries.EbrainsFeatureQuery attribute)
compare_arrays() (in module siibra.commons)
CompareMapsResult (class in siibra.commons)
components (siibra.core.region.SpatialProp attribute)
Compoundable (class in siibra.features.feature)
CompoundFeature (class in siibra.features.feature)
compress() (siibra.volumes.Map method)
(siibra.volumes.parcellationmap.Map method)
compute_centroids() (siibra.core.region.Region method)
(siibra.features.connectivity.regional_connectivity.RegionalConnectivity method)
(siibra.features.tabular.regional_timeseries_activity.RegionalTimeseriesActivity method)
(siibra.volumes.Map method)
(siibra.volumes.parcellationmap.Map method)
CONFIG_CONNECTORS (siibra.configuration.Configuration attribute)
(siibra.configuration.configuration.Configuration attribute)
CONFIG_EXTENSIONS (siibra.configuration.Configuration attribute)
(siibra.configuration.configuration.Configuration attribute)
CONFIG_REPOS (siibra.configuration.Configuration attribute)
(siibra.configuration.configuration.Configuration attribute)
Configuration (class in siibra.configuration)
(class in siibra.configuration.configuration)
ConflictingArgumentException
connected_components() (in module siibra.commons)
connectors (siibra.retrieval.requests.GitlabProxyEnum property)
CONTAINED (siibra.core.assignment.Qualification attribute)
CONTAINS (siibra.core.assignment.Qualification attribute)
Contour (class in siibra.experimental)
(class in siibra.experimental.contour)
contributors (siibra.retrieval.datasets.EbrainsBaseDataset property)
(siibra.retrieval.datasets.EbrainsDataset property)
(siibra.retrieval.datasets.EbrainsV3Dataset property)
(siibra.retrieval.datasets.EbrainsV3DatasetVersion property)
(siibra.retrieval.datasets.GenericDataset property)
coordinates (siibra.locations.PointSet property)
(siibra.locations.pointset.PointSet property)
(siibra.PointSet property)
coords() (siibra.volumes.sparsemap.SparseIndex method)
copy() (siibra.core.region.Region static method)
correlation (siibra.commons.CompareMapsResult attribute)
CorticalProfile (class in siibra.features.tabular.cortical_profile)
CorticalProfileSampler (class in siibra.experimental)
(class in siibra.experimental.cortical_profile_sampler)
create_gaussian_kernel() (in module siibra.commons)
create_key() (in module siibra.commons)
crop() (siibra.experimental.Contour method)
(siibra.experimental.contour.Contour method)
custodians (siibra.retrieval.datasets.EbrainsBaseDataset property)
(siibra.retrieval.datasets.EbrainsDataset property)
(siibra.retrieval.datasets.EbrainsV3Dataset property)
(siibra.retrieval.datasets.EbrainsV3DatasetVersion property)
D
data (siibra.features.connectivity.regional_connectivity.RegionalConnectivity property)
(siibra.features.feature.CompoundFeature property)
(siibra.features.tabular.cortical_profile.CorticalProfile property)
(siibra.features.tabular.layerwise_cell_density.LayerwiseCellDensity property)
(siibra.features.tabular.LayerwiseCellDensity property)
(siibra.features.tabular.receptor_density_fingerprint.ReceptorDensityFingerprint property)
(siibra.features.tabular.ReceptorDensityFingerprint property)
(siibra.features.tabular.regional_timeseries_activity.RegionalTimeseriesActivity property)
(siibra.features.tabular.tabular.Tabular property)
DATA (siibra.retrieval.cache.WarmupLevel attribute)
data (siibra.retrieval.HttpRequest property)
(siibra.retrieval.LocalFileRepository.FileLoader property)
(siibra.retrieval.repositories.LocalFileRepository.FileLoader property)
(siibra.retrieval.repositories.ZipfileConnector.ZipFileLoader property)
(siibra.retrieval.requests.HttpRequest property)
(siibra.retrieval.requests.MultiSourcedRequest property)
(siibra.retrieval.ZipfileConnector.ZipFileLoader property)
DATA (siibra.WarmupLevel attribute)
dataframe (siibra.commons.InstanceTable property)
(siibra.vocabularies.InstanceTable property)
DATASET (siibra.features.tabular.gene_expression.GeneExpressions attribute)
(siibra.features.tabular.GeneExpressions attribute)
(siibra.livequeries.bigbrain.WagstylProfileLoader attribute)
DATASET_V1 (siibra.retrieval.requests.GitlabProxyEnum attribute)
DATASET_V3 (siibra.retrieval.requests.GitlabProxyEnum attribute)
DATASETVERSION_V3 (siibra.retrieval.requests.GitlabProxyEnum attribute)
decode() (siibra.commons.Species class method)
decode_int() (in module siibra.explorer.util)
decode_number() (in module siibra.explorer.util)
decode_url() (in module siibra.explorer)
(in module siibra.explorer.url)
DecodedUrl (class in siibra.explorer.url)
DecodeNavigationException
DECODERS (in module siibra.retrieval.requests)
default_root_url (in module siibra.explorer.url)
density_image (siibra.features.tabular.cell_density_profile.CellDensityProfile property)
(siibra.features.tabular.CellDensityProfile property)
depth_image (siibra.features.tabular.cell_density_profile.CellDensityProfile property)
(siibra.features.tabular.CellDensityProfile property)
deregister_warmup_fn() (siibra.retrieval.cache.Warmup class method)
(siibra.Warmup class method)
description (siibra.core.concept.AtlasConcept property)
(siibra.features.dataset.ebrains.EbrainsDataFeature property)
(siibra.features.dataset.EbrainsDataFeature property)
(siibra.features.Feature property)
(siibra.features.feature.Feature property)
(siibra.features.image.image.Image property)
DESCRIPTION (siibra.features.tabular.bigbrain_intensity_profile.BigBrainIntensityProfile attribute)
(siibra.features.tabular.BigBrainIntensityProfile attribute)
(siibra.features.tabular.cell_density_profile.CellDensityProfile attribute)
(siibra.features.tabular.CellDensityProfile attribute)
(siibra.features.tabular.gene_expression.GeneExpressions attribute)
(siibra.features.tabular.GeneExpressions attribute)
(siibra.features.tabular.layerwise_bigbrain_intensities.LayerwiseBigBrainIntensities attribute)
(siibra.features.tabular.layerwise_cell_density.LayerwiseCellDensity attribute)
(siibra.features.tabular.LayerwiseBigBrainIntensities attribute)
(siibra.features.tabular.LayerwiseCellDensity attribute)
(siibra.features.tabular.receptor_density_fingerprint.ReceptorDensityFingerprint attribute)
(siibra.features.tabular.receptor_density_profile.ReceptorDensityProfile attribute)
(siibra.features.tabular.ReceptorDensityFingerprint attribute)
(siibra.features.tabular.ReceptorDensityProfile attribute)
description (siibra.retrieval.datasets.EbrainsBaseDataset property)
(siibra.retrieval.datasets.EbrainsDataset property)
(siibra.retrieval.datasets.EbrainsV3Dataset property)
(siibra.retrieval.datasets.EbrainsV3DatasetVersion property)
(siibra.retrieval.datasets.GenericDataset property)
(siibra.retrieval.EbrainsPublicDatasetConnector property)
(siibra.retrieval.repositories.EbrainsPublicDatasetConnector property)
device_flow() (siibra.retrieval.EbrainsRequest class method)
(siibra.retrieval.requests.EbrainsRequest class method)
distance_from_origin (siibra.experimental.Plane3D property)
(siibra.experimental.plane3d.Plane3D property)
DOI_TMPL (in module siibra.features.dataset.ebrains)
draw_samples() (siibra.volumes.Volume method)
(siibra.volumes.volume.Volume method)
DTIVolumeOfInterest (class in siibra.features.image)
(class in siibra.features.image.volume_of_interest)
dtype (siibra.volumes.providers.neuroglancer.NeuroglancerVolume property)
E
ebrains_page (siibra.retrieval.datasets.EbrainsBaseDataset property)
(siibra.retrieval.datasets.EbrainsDataset property)
(siibra.retrieval.datasets.EbrainsV3Dataset property)
(siibra.retrieval.datasets.EbrainsV3DatasetVersion property)
EbrainsAuthenticationError
EbrainsBaseDataset (class in siibra.retrieval.datasets)
EbrainsDataFeature (class in siibra.features.dataset)
(class in siibra.features.dataset.ebrains)
EbrainsDataset (class in siibra.retrieval.datasets)
EbrainsDatasetEmbargoStatus (in module siibra.retrieval.datasets)
EbrainsDatasetPerson (in module siibra.retrieval.datasets)
EbrainsDatasetUrl (class in siibra.retrieval.datasets)
EbrainsFeatureQuery (class in siibra.livequeries)
(class in siibra.livequeries.ebrains)
EbrainsHdgConnector (class in siibra.retrieval)
(class in siibra.retrieval.repositories)
EbrainsPublicDatasetConnector (class in siibra.retrieval)
(class in siibra.retrieval.repositories)
EbrainsPublicDatasetConnectorMinds (class in siibra.retrieval.repositories)
EbrainsRequest (class in siibra.retrieval)
(class in siibra.retrieval.requests)
EbrainsV3Dataset (class in siibra.retrieval.datasets)
EbrainsV3DatasetVersion (class in siibra.retrieval.datasets)
elements (siibra.features.feature.CompoundFeature property)
encode_int() (in module siibra.explorer.util)
encode_number() (in module siibra.explorer.util)
encode_url() (in module siibra.explorer)
(in module siibra.explorer.url)
EncodeLiveQueryIdException
estimate_affine() (siibra.locations.BoundingBox method)
(siibra.locations.boundingbox.BoundingBox method)
evaluate_points() (siibra.volumes.Volume method)
(siibra.volumes.volume.Volume method)
EXACT (siibra.core.assignment.Qualification attribute)
ExcessiveArgumentException
explanation (siibra.core.assignment.AnatomicalAssignment attribute)
extend_configuration() (siibra.configuration.Configuration class method)
(siibra.configuration.configuration.Configuration class method)
extract_anchor() (siibra.configuration.factory.Factory class method)
extract_connector() (siibra.configuration.factory.Factory class method)
extract_datasets() (siibra.configuration.factory.Factory class method)
extract_decoder() (siibra.configuration.factory.Factory class method)
extract_volume() (siibra.experimental.Patch method)
(siibra.experimental.patch.Patch method)
extract_volumes() (siibra.configuration.factory.Factory class method)
F
factors (siibra.livequeries.allen.AllenBrainAtlasQuery attribute)
(siibra.livequeries.AllenBrainAtlasQuery attribute)
Factory (class in siibra.configuration.factory)
Feature (class in siibra.features)
(class in siibra.features.feature)
feature (siibra.features.connectivity.regional_connectivity.RegionalConnectivity property)
feature_type (siibra.features.feature.CompoundFeature property)
fetch() (siibra.volumes.Map method)
(siibra.volumes.parcellationmap.Map method)
(siibra.volumes.providers.freesurfer.FreesurferAnnot method)
(siibra.volumes.providers.freesurfer.ZippedFreesurferAnnot method)
(siibra.volumes.providers.FreesurferAnnot method)
(siibra.volumes.providers.gifti.GiftiMesh method)
(siibra.volumes.providers.gifti.GiftiSurfaceLabeling method)
(siibra.volumes.providers.GiftiMesh method)
(siibra.volumes.providers.GiftiSurfaceLabeling method)
(siibra.volumes.providers.neuroglancer.NeuroglancerMesh method)
(siibra.volumes.providers.neuroglancer.NeuroglancerProvider method)
(siibra.volumes.providers.neuroglancer.NeuroglancerScale method)
(siibra.volumes.providers.neuroglancer.NeuroglancerSurfaceMesh method)
(siibra.volumes.providers.neuroglancer.NeuroglancerVolume method)
(siibra.volumes.providers.NeuroglancerMesh method)
(siibra.volumes.providers.NeuroglancerProvider method)
(siibra.volumes.providers.nifti.NiftiProvider method)
(siibra.volumes.providers.NiftiProvider method)
(siibra.volumes.providers.provider.SubvolumeProvider method)
(siibra.volumes.providers.provider.VolumeProvider method)
(siibra.volumes.providers.ZippedFreesurferAnnot method)
(siibra.volumes.sparsemap.SparseMap method)
(siibra.volumes.Volume method)
(siibra.volumes.volume.Volume method)
fetch_connected_components() (siibra.volumes.Volume method)
(siibra.volumes.volume.Volume method)
fetch_ebrains_token (in module siibra)
fetch_iter() (siibra.volumes.Map method)
(siibra.volumes.parcellationmap.Map method)
(siibra.volumes.providers.gifti.GiftiMesh method)
(siibra.volumes.providers.GiftiMesh method)
fetch_token() (siibra.retrieval.EbrainsRequest class method)
(siibra.retrieval.requests.EbrainsRequest class method)
filter_attributes (siibra.features.feature.Compoundable property)
find() (siibra.commons.InstanceTable method)
(siibra.core.region.Region method)
(siibra.vocabularies.InstanceTable method)
find_clusters() (siibra.locations.PointSet method)
(siibra.locations.pointset.PointSet method)
(siibra.PointSet method)
find_indices() (siibra.volumes.Map method)
(siibra.volumes.parcellationmap.Map method)
find_peaks() (siibra.volumes.providers.nifti.NiftiProvider method)
(siibra.volumes.providers.NiftiProvider method)
(siibra.volumes.Volume method)
(siibra.volumes.volume.Volume method)
find_regions (in module siibra)
find_regions() (siibra.core.atlas.Atlas method)
(siibra.core.parcellation.Parcellation static method)
find_suitiable_decoder() (in module siibra.retrieval.requests)
flip() (siibra.experimental.Patch method)
(siibra.experimental.patch.Patch method)
fn (siibra.retrieval.cache.WarmupParam attribute)
fn_eql() (siibra.retrieval.cache.Warmup static method)
(siibra.Warmup static method)
folder (siibra.retrieval.cache.Cache attribute)
folder_dict (siibra.retrieval.requests.GitlabProxy attribute)
folders (siibra.configuration.Configuration property)
(siibra.configuration.configuration.Configuration property)
formats (siibra.volumes.Map property)
(siibra.volumes.parcellationmap.Map property)
(siibra.volumes.Volume property)
(siibra.volumes.volume.Volume property)
formatter (in module siibra.commons)
fragment (siibra.volumes.parcellationmap.MapAssignment attribute)
fragments (siibra.volumes.Map property)
(siibra.volumes.parcellationmap.Map property)
(siibra.volumes.providers.gifti.GiftiMesh property)
(siibra.volumes.providers.GiftiMesh property)
(siibra.volumes.providers.neuroglancer.NeuroglancerSurfaceMesh property)
(siibra.volumes.providers.nifti.NiftiProvider property)
(siibra.volumes.providers.NiftiProvider property)
(siibra.volumes.providers.provider.VolumeProvider property)
(siibra.volumes.Volume property)
(siibra.volumes.volume.Volume property)
FreesurferAnnot (class in siibra.volumes.providers)
(class in siibra.volumes.providers.freesurfer)
from_array() (in module siibra.locations.boundingbox)
(in module siibra.volumes)
(in module siibra.volumes.volume)
from_dict() (siibra.commons.MapIndex class method)
(siibra.MapIndex class method)
from_file() (in module siibra.volumes)
(in module siibra.volumes.volume)
from_image() (siibra.experimental.Plane3D class method)
(siibra.experimental.plane3d.Plane3D class method)
from_json (in module siibra)
from_json() (siibra.configuration.factory.Factory class method)
from_nifti() (in module siibra.volumes)
(in module siibra.volumes.volume)
from_points() (in module siibra.locations)
(in module siibra.locations.pointset)
from_pointset() (in module siibra.volumes)
(in module siibra.volumes.volume)
from_volume() (in module siibra.volumes.parcellationmap)
FunctionalConnectivity (class in siibra.features.connectivity)
(class in siibra.features.connectivity.functional_connectivity)
G
GeneExpressions (class in siibra.features.tabular)
(class in siibra.features.tabular.gene_expression)
generate_uuid() (in module siibra.commons)
GenericDataset (class in siibra.retrieval.datasets)
get (in module siibra.features)
get() (siibra.commons.InstanceTable method)
(siibra.retrieval.EbrainsRequest method)
(siibra.retrieval.HttpRequest method)
(siibra.retrieval.repositories.RepositoryConnector method)
(siibra.retrieval.requests.EbrainsRequest method)
(siibra.retrieval.requests.GitlabProxy method)
(siibra.retrieval.requests.GitlabProxyEnum method)
(siibra.retrieval.requests.HttpRequest method)
(siibra.retrieval.requests.MultiSourcedRequest method)
(siibra.retrieval.requests.ZipfileRequest method)
(siibra.retrieval.ZipfileRequest method)
(siibra.vocabularies.InstanceTable method)
get_boundingbox() (siibra.core.region.Region method)
(siibra.volumes.providers.freesurfer.FreesurferAnnot method)
(siibra.volumes.providers.freesurfer.ZippedFreesurferAnnot method)
(siibra.volumes.providers.FreesurferAnnot method)
(siibra.volumes.providers.gifti.GiftiMesh method)
(siibra.volumes.providers.gifti.GiftiSurfaceLabeling method)
(siibra.volumes.providers.GiftiMesh method)
(siibra.volumes.providers.GiftiSurfaceLabeling method)
(siibra.volumes.providers.neuroglancer.NeuroglancerMesh method)
(siibra.volumes.providers.neuroglancer.NeuroglancerProvider method)
(siibra.volumes.providers.NeuroglancerMesh method)
(siibra.volumes.providers.NeuroglancerProvider method)
(siibra.volumes.providers.nifti.NiftiProvider method)
(siibra.volumes.providers.NiftiProvider method)
(siibra.volumes.providers.provider.SubvolumeProvider method)
(siibra.volumes.providers.provider.VolumeProvider method)
(siibra.volumes.providers.ZippedFreesurferAnnot method)
(siibra.volumes.Volume method)
(siibra.volumes.volume.Volume method)
get_colormap() (siibra.volumes.Map method)
(siibra.volumes.parcellationmap.Map method)
get_element() (siibra.features.feature.CompoundFeature method)
get_enclosing_cube() (siibra.locations.Point method)
(siibra.locations.point.Point method)
(siibra.Point method)
get_enclosing_patch() (siibra.experimental.Plane3D method)
(siibra.experimental.plane3d.Plane3D method)
get_folders() (siibra.configuration.Configuration static method)
(siibra.configuration.configuration.Configuration static method)
get_hash() (in module siibra.explorer.url)
get_index() (siibra.volumes.Map method)
(siibra.volumes.parcellationmap.Map method)
get_instance() (siibra.core.concept.AtlasConcept class method)
get_loader() (siibra.retrieval.EbrainsHdgConnector method)
(siibra.retrieval.EbrainsPublicDatasetConnector method)
(siibra.retrieval.GitlabConnector method)
(siibra.retrieval.LocalFileRepository method)
(siibra.retrieval.repositories.EbrainsHdgConnector method)
(siibra.retrieval.repositories.EbrainsPublicDatasetConnector method)
(siibra.retrieval.repositories.EbrainsPublicDatasetConnectorMinds method)
(siibra.retrieval.repositories.GithubConnector method)
(siibra.retrieval.repositories.GitlabConnector method)
(siibra.retrieval.repositories.LocalFileRepository method)
(siibra.retrieval.repositories.RepositoryConnector method)
(siibra.retrieval.repositories.ZipfileConnector method)
(siibra.retrieval.ZipfileConnector method)
get_loaders() (siibra.retrieval.repositories.RepositoryConnector method)
get_map() (in module siibra)
(siibra.core.atlas.Atlas method)
(siibra.core.parcellation.Parcellation method)
get_object() (siibra.core.region.RegionRelationAssessments class method)
get_parcellation() (siibra.core.atlas.Atlas method)
get_peid_from_region() (in module siibra.core.region)
get_perspective_zoom() (in module siibra.explorer.url)
get_profile() (siibra.features.connectivity.regional_connectivity.RegionalConnectivity method)
get_profile_colorscale() (siibra.features.connectivity.regional_connectivity.RegionalConnectivity method)
get_region() (in module siibra)
(siibra.core.atlas.Atlas method)
(siibra.core.parcellation.Parcellation method)
(siibra.volumes.Map method)
(siibra.volumes.parcellationmap.Map method)
get_regional_map() (siibra.core.region.Region method)
get_registry() (in module siibra.core.concept)
get_related_regions() (in module siibra.core.region)
(siibra.core.region.Region method)
get_resampled_template() (siibra.volumes.Map method)
(siibra.volumes.parcellationmap.Map method)
get_shape() (siibra.volumes.providers.neuroglancer.NeuroglancerVolume method)
(siibra.volumes.providers.nifti.NiftiProvider method)
(siibra.volumes.providers.NiftiProvider method)
get_snapshot_factory() (siibra.core.region.RegionRelationAssessments class method)
get_space() (siibra.core.atlas.Atlas method)
get_template() (in module siibra)
(siibra.core.atlas.Atlas method)
(siibra.core.space.Space method)
get_uuid() (siibra.core.region.RegionRelationAssessments static method)
get_voi() (siibra.core.atlas.Atlas method)
get_zoom() (in module siibra.explorer.url)
GiftiMesh (class in siibra.volumes.providers)
(class in siibra.volumes.providers.gifti)
GiftiSurfaceLabeling (class in siibra.volumes.providers)
(class in siibra.volumes.providers.gifti)
GithubConnector (class in siibra.retrieval.repositories)
GitlabConnector (class in siibra.retrieval)
(class in siibra.retrieval.repositories)
GitlabProxy (class in siibra.retrieval.requests)
GitlabProxyEnum (class in siibra.retrieval.requests)
H
has_constant_sigma (siibra.locations.PointSet property)
(siibra.locations.pointset.PointSet property)
(siibra.PointSet property)
has_parent() (siibra.core.region.Region method)
has_region_aliases (siibra.features.anchor.AnatomicalAnchor property)
HBP_AUTH_TOKEN (in module siibra.commons)
HOMO_SAPIENS (siibra.commons.Species attribute)
homogeneous (siibra.locations.Point property)
(siibra.locations.point.Point property)
(siibra.locations.PointSet property)
(siibra.locations.pointset.PointSet property)
(siibra.Point property)
(siibra.PointSet property)
HOMOLOGOUS (siibra.core.assignment.Qualification attribute)
HttpRequest (class in siibra.retrieval)
(class in siibra.retrieval.requests)
I
id (siibra.core.concept.AtlasConcept property)
(siibra.core.parcellation.Parcellation property)
(siibra.core.region.Region property)
(siibra.features.connectivity.functional_connectivity.FunctionalConnectivity property)
(siibra.features.connectivity.FunctionalConnectivity property)
(siibra.features.dataset.ebrains.EbrainsDataFeature property)
(siibra.features.dataset.EbrainsDataFeature property)
(siibra.features.Feature property)
(siibra.features.feature.CompoundFeature property)
(siibra.features.feature.Feature property)
(siibra.locations.BoundingBox property)
(siibra.locations.boundingbox.BoundingBox property)
(siibra.locations.Point property)
(siibra.locations.point.Point property)
(siibra.Point property)
(siibra.retrieval.datasets.EbrainsBaseDataset property)
(siibra.retrieval.datasets.EbrainsDataset property)
(siibra.retrieval.datasets.EbrainsV3Dataset property)
(siibra.retrieval.datasets.EbrainsV3DatasetVersion property)
(siibra.retrieval.datasets.GenericDataset property)
Image (class in siibra.features.image.image)
IMAGE_FORMATS (siibra.volumes.Volume attribute)
(siibra.volumes.volume.Volume attribute)
ImageAnchor (class in siibra.features.image.image)
includes() (siibra.core.region.Region method)
indexing_attributes (siibra.features.feature.CompoundFeature property)
indices (siibra.features.feature.CompoundFeature property)
init_oidc() (siibra.retrieval.EbrainsRequest class method)
(siibra.retrieval.requests.EbrainsRequest class method)
input_structure (siibra.volumes.parcellationmap.MapAssignment attribute)
INSTANCE (siibra.retrieval.cache.WarmupLevel attribute)
(siibra.WarmupLevel attribute)
instance() (siibra.retrieval.cache.Cache class method)
InstanceTable (class in siibra.commons)
(class in siibra.vocabularies)
InsufficientArgumentException
intersect_line_segments() (siibra.experimental.Plane3D method)
(siibra.experimental.plane3d.Plane3D method)
intersect_mesh() (siibra.experimental.Plane3D method)
(siibra.experimental.plane3d.Plane3D method)
intersection() (siibra.core.region.Region method)
(siibra.core.structure.BrainStructure method)
(siibra.locations.BoundingBox method)
(siibra.locations.boundingbox.BoundingBox method)
(siibra.locations.Point method)
(siibra.locations.point.Point method)
(siibra.locations.PointSet method)
(siibra.locations.pointset.PointSet method)
(siibra.Point method)
(siibra.PointSet method)
(siibra.volumes.Volume method)
(siibra.volumes.volume.Volume method)
intersection_over_first (siibra.commons.CompareMapsResult attribute)
intersection_over_second (siibra.commons.CompareMapsResult attribute)
intersection_over_union (siibra.commons.CompareMapsResult attribute)
intersects() (siibra.core.structure.BrainStructure method)
invert() (siibra.core.assignment.AnatomicalAssignment method)
(siibra.core.assignment.Qualification method)
io (siibra.volumes.providers.neuroglancer.NeuroglancerVolume property)
is_exact (siibra.core.assignment.AnatomicalAssignment property)
is_factory (siibra.retrieval.cache.WarmupParam attribute)
is_float() (siibra.volumes.providers.neuroglancer.NeuroglancerVolume method)
(siibra.volumes.providers.nifti.NiftiProvider method)
(siibra.volumes.providers.NiftiProvider method)
is_labelled (siibra.volumes.Map property)
(siibra.volumes.parcellationmap.Map property)
is_mesh() (in module siibra.commons)
is_newest_version (siibra.core.parcellation.Parcellation property)
is_planar (siibra.locations.BoundingBox property)
(siibra.locations.boundingbox.BoundingBox property)
is_registered() (siibra.retrieval.cache.Warmup class method)
(siibra.Warmup class method)
is_version_of (siibra.retrieval.datasets.EbrainsV3DatasetVersion property)
J
jobmemory_path (in module siibra.retrieval.cache)
K
key (siibra.core.concept.AtlasConcept property)
(siibra.features.tabular.cell_density_profile.CellDensityProfile property)
(siibra.features.tabular.CellDensityProfile property)
(siibra.features.tabular.layerwise_cell_density.LayerwiseCellDensity property)
(siibra.features.tabular.LayerwiseCellDensity property)
(siibra.features.tabular.receptor_density_profile.ReceptorDensityProfile property)
(siibra.features.tabular.ReceptorDensityProfile property)
key_to_name() (siibra.commons.Species static method)
KEYCLOAK_CLIENT_ID (in module siibra.commons)
KEYCLOAK_CLIENT_SECRET (in module siibra.commons)
keycloak_endpoint (siibra.retrieval.EbrainsRequest attribute)
(siibra.retrieval.requests.EbrainsRequest attribute)
kg_token (siibra.retrieval.EbrainsRequest property)
(siibra.retrieval.requests.EbrainsRequest property)
L
label_colors (siibra.locations.PointSet property)
(siibra.locations.pointset.PointSet property)
(siibra.PointSet property)
LABELLED (siibra.commons.MapType attribute)
(siibra.MapType attribute)
labels (siibra.volumes.Map property)
(siibra.volumes.parcellationmap.Map property)
last_match_description (siibra.features.anchor.AnatomicalAnchor property)
(siibra.features.Feature property)
(siibra.features.feature.Feature property)
last_match_result (siibra.features.anchor.AnatomicalAnchor property)
(siibra.features.Feature property)
(siibra.features.feature.Feature property)
layer_annotation() (siibra.features.tabular.cell_density_profile.CellDensityProfile method)
(siibra.features.tabular.CellDensityProfile method)
layer_mask (siibra.features.tabular.cell_density_profile.CellDensityProfile property)
(siibra.features.tabular.CellDensityProfile property)
LAYER_READER() (siibra.features.tabular.cell_density_profile.CellDensityProfile class method)
(siibra.features.tabular.CellDensityProfile class method)
(siibra.features.tabular.layerwise_cell_density.LayerwiseCellDensity class method)
(siibra.features.tabular.LayerwiseCellDensity class method)
layers (siibra.features.tabular.cell_density_profile.CellDensityProfile property)
(siibra.features.tabular.CellDensityProfile property)
LAYERS (siibra.features.tabular.cortical_profile.CorticalProfile attribute)
LayerwiseBigBrainIntensities (class in siibra.features.tabular)
(class in siibra.features.tabular.layerwise_bigbrain_intensities)
LayerwiseBigBrainIntensityQuery (class in siibra.livequeries)
(class in siibra.livequeries.bigbrain)
LayerwiseCellDensity (class in siibra.features.tabular)
(class in siibra.features.tabular.layerwise_cell_density)
length() (siibra.commons.PolyLine method)
level (siibra.retrieval.cache.WarmupParam attribute)
LICENSE (siibra.core.concept.AtlasConcept property)
(siibra.features.Feature property)
(siibra.features.feature.Feature property)
(siibra.retrieval.datasets.EbrainsBaseDataset property)
(siibra.retrieval.datasets.GenericDataset property)
LiveQuery (class in siibra.livequeries.query)
load_zipped_sparseindex() (siibra.volumes.sparsemap.SparseMap method)
loader (siibra.livequeries.ebrains.EbrainsFeatureQuery attribute)
(siibra.livequeries.EbrainsFeatureQuery attribute)
LocalFileRepository (class in siibra.retrieval)
(class in siibra.retrieval.repositories)
LocalFileRepository.FileLoader (class in siibra.retrieval)
(class in siibra.retrieval.repositories)
Location (class in siibra.locations)
(class in siibra.locations.location)
location (siibra.features.anchor.AnatomicalAnchor property)
(siibra.features.image.image.ImageAnchor property)
(siibra.features.tabular.bigbrain_intensity_profile.BigBrainIntensityProfile property)
(siibra.features.tabular.BigBrainIntensityProfile property)
(siibra.features.tabular.cell_density_profile.CellDensityProfile property)
(siibra.features.tabular.CellDensityProfile property)
logger (in module siibra)
(in module siibra.commons)
(in module siibra.features)
(in module siibra.volumes)
LoggingContext (class in siibra.commons)
LSFMVolumeOfInterest (class in siibra.features.image)
(class in siibra.features.image.volume_of_interest)
M
MACACA_FASCICULARIS (siibra.commons.Species attribute)
MACACA_FUSCATA (siibra.commons.Species attribute)
MACACA_MULATTA (siibra.commons.Species attribute)
Map (class in siibra.volumes)
(class in siibra.volumes.parcellationmap)
map_type (siibra.volumes.providers.neuroglancer.NeuroglancerVolume property)
map_value (siibra.volumes.parcellationmap.MapAssignment attribute)
MapAssignment (class in siibra.volumes.parcellationmap)
MapIndex (class in siibra)
(class in siibra.commons)
mapped_in_space() (siibra.core.region.Region method)
mapped_voxels() (siibra.volumes.sparsemap.SparseIndex method)
MapType (class in siibra)
(class in siibra.commons)
maptype (siibra.volumes.Map property)
(siibra.volumes.parcellationmap.Map property)
match() (siibra.core.concept.AtlasConcept class method)
(siibra.retrieval.datasets.EbrainsBaseDataset method)
matches() (siibra.core.concept.AtlasConcept method)
(siibra.core.parcellation.Parcellation method)
(siibra.core.region.Region method)
(siibra.features.anchor.AnatomicalAnchor method)
(siibra.features.Feature method)
(siibra.features.feature.Feature method)
max() (siibra.volumes.sparsemap.SparseIndex method)
MAX_BYTES (siibra.volumes.providers.neuroglancer.NeuroglancerVolume attribute)
max_int32 (in module siibra.explorer.url)
maxentries (siibra.retrieval.EbrainsHdgConnector attribute)
(siibra.retrieval.EbrainsPublicDatasetConnector attribute)
(siibra.retrieval.repositories.EbrainsHdgConnector attribute)
(siibra.retrieval.repositories.EbrainsPublicDatasetConnector attribute)
(siibra.retrieval.repositories.EbrainsPublicDatasetConnectorMinds attribute)
merge() (in module siibra.volumes.volume)
merge_meshes() (in module siibra.commons)
MESH_FILE_LEFT (siibra.livequeries.bigbrain.WagstylProfileLoader attribute)
MESH_FORMATS (siibra.volumes.Volume attribute)
(siibra.volumes.volume.Volume attribute)
MI() (in module siibra.commons)
min_int32 (in module siibra.explorer.url)
modality (siibra.features.Feature property)
(siibra.features.feature.Feature property)
module
siibra
siibra.commons
,
[1]
siibra.configuration
,
[1]
siibra.configuration.configuration
siibra.configuration.factory
siibra.core
,
[1]
siibra.core.assignment
,
[1]
siibra.core.atlas
,
[1]
siibra.core.concept
,
[1]
siibra.core.parcellation
,
[1]
siibra.core.region
,
[1]
siibra.core.space
,
[1]
siibra.core.structure
,
[1]
siibra.exceptions
,
[1]
siibra.experimental
,
[1]
siibra.experimental.contour
siibra.experimental.cortical_profile_sampler
siibra.experimental.patch
siibra.experimental.plane3d
siibra.explorer
,
[1]
siibra.explorer.url
siibra.explorer.util
siibra.features
,
[1]
siibra.features.anchor
,
[1]
siibra.features.connectivity
,
[1]
siibra.features.connectivity.functional_connectivity
siibra.features.connectivity.regional_connectivity
siibra.features.connectivity.streamline_counts
siibra.features.connectivity.streamline_lengths
siibra.features.connectivity.tracing_connectivity
siibra.features.dataset
,
[1]
siibra.features.dataset.ebrains
siibra.features.feature
,
[1]
siibra.features.image
,
[1]
siibra.features.image.image
siibra.features.image.sections
siibra.features.image.volume_of_interest
siibra.features.tabular
,
[1]
siibra.features.tabular.bigbrain_intensity_profile
siibra.features.tabular.cell_density_profile
siibra.features.tabular.cortical_profile
siibra.features.tabular.gene_expression
siibra.features.tabular.layerwise_bigbrain_intensities
siibra.features.tabular.layerwise_cell_density
siibra.features.tabular.receptor_density_fingerprint
siibra.features.tabular.receptor_density_profile
siibra.features.tabular.regional_timeseries_activity
siibra.features.tabular.tabular
siibra.livequeries
,
[1]
siibra.livequeries.allen
,
[1]
siibra.livequeries.bigbrain
,
[1]
siibra.livequeries.ebrains
,
[1]
siibra.livequeries.query
,
[1]
siibra.locations
,
[1]
siibra.locations.boundingbox
,
[1]
siibra.locations.location
,
[1]
siibra.locations.point
,
[1]
siibra.locations.pointset
,
[1]
siibra.retrieval
,
[1]
siibra.retrieval.cache
,
[1]
siibra.retrieval.datasets
,
[1]
siibra.retrieval.exceptions
,
[1]
siibra.retrieval.repositories
,
[1]
siibra.retrieval.requests
,
[1]
siibra.vocabularies
,
[1]
siibra.volumes
,
[1]
siibra.volumes.parcellationmap
,
[1]
siibra.volumes.providers
,
[1]
siibra.volumes.providers.freesurfer
siibra.volumes.providers.gifti
siibra.volumes.providers.neuroglancer
siibra.volumes.providers.nifti
siibra.volumes.providers.provider
siibra.volumes.sparsemap
,
[1]
siibra.volumes.volume
,
[1]
MRIVolumeOfInterest (class in siibra.features.image)
(class in siibra.features.image.volume_of_interest)
MultiSourcedRequest (class in siibra.retrieval.requests)
MultiSourceRequestException
MUS_MUSCULUS (siibra.commons.Species attribute)
N
name (siibra.features.connectivity.functional_connectivity.FunctionalConnectivity property)
(siibra.features.connectivity.FunctionalConnectivity property)
(siibra.features.connectivity.regional_connectivity.RegionalConnectivity property)
(siibra.features.dataset.ebrains.EbrainsDataFeature property)
(siibra.features.dataset.EbrainsDataFeature property)
(siibra.features.Feature property)
(siibra.features.feature.CompoundFeature property)
(siibra.features.feature.Feature property)
(siibra.features.image.image.Image property)
(siibra.features.tabular.cortical_profile.CorticalProfile property)
(siibra.features.tabular.regional_timeseries_activity.RegionalBOLD property)
(siibra.features.tabular.regional_timeseries_activity.RegionalTimeseriesActivity property)
(siibra.features.tabular.RegionalBOLD property)
(siibra.retrieval.datasets.EbrainsBaseDataset property)
(siibra.retrieval.datasets.EbrainsDataset property)
(siibra.retrieval.datasets.EbrainsV3Dataset property)
(siibra.retrieval.datasets.EbrainsV3DatasetVersion property)
(siibra.retrieval.datasets.GenericDataset property)
(siibra.retrieval.EbrainsPublicDatasetConnector property)
(siibra.retrieval.repositories.EbrainsPublicDatasetConnector property)
(siibra.volumes.Volume property)
(siibra.volumes.volume.Volume property)
name_to_key() (siibra.commons.Species static method)
names (siibra.core.region.Region property)
neg (in module siibra.explorer.util)
NeuroglancerMesh (class in siibra.volumes.providers)
(class in siibra.volumes.providers.neuroglancer)
NeuroglancerProvider (class in siibra.volumes.providers)
(class in siibra.volumes.providers.neuroglancer)
NeuroglancerScale (class in siibra.volumes.providers.neuroglancer)
NeuroglancerSurfaceMesh (class in siibra.volumes.providers.neuroglancer)
NeuroglancerVolume (class in siibra.volumes.providers.neuroglancer)
neurotransmitter (siibra.features.tabular.receptor_density_profile.ReceptorDensityProfile property)
(siibra.features.tabular.ReceptorDensityProfile property)
neurotransmitters (siibra.features.tabular.receptor_density_fingerprint.ReceptorDensityFingerprint property)
(siibra.features.tabular.ReceptorDensityFingerprint property)
next() (siibra.volumes.providers.neuroglancer.NeuroglancerScale method)
NiftiProvider (class in siibra.volumes.providers)
(class in siibra.volumes.providers.nifti)
NoMapAvailableError
NonUniqueIndexError
nonzero_coordinates() (in module siibra.commons)
normal (siibra.experimental.Plane3D property)
(siibra.experimental.plane3d.Plane3D property)
NoSiibraConfigMirrorsAvailableException
,
[1]
NotFoundException
NoVolumeFound
num_volumes (siibra.volumes.sparsemap.SparseIndex property)
NZCACHE (in module siibra.commons)
O
OTHER_VERSION (siibra.core.assignment.Qualification attribute)
OVERLAPS (siibra.core.assignment.Qualification attribute)
OwncloudConnector (class in siibra.retrieval)
(class in siibra.retrieval.repositories)
P
Parcellation (class in siibra.core.parcellation)
parcellation (siibra.core.region.Region property)
(siibra.volumes.Map property)
(siibra.volumes.parcellationmap.Map property)
parcellation_ids (siibra.livequeries.ebrains.EbrainsFeatureQuery attribute)
(siibra.livequeries.EbrainsFeatureQuery attribute)
PARCELLATIONREGION_V1 (siibra.retrieval.requests.GitlabProxyEnum attribute)
parcellations (siibra.core.atlas.Atlas property)
(siibra.features.anchor.AnatomicalAnchor property)
ParcellationVersion (class in siibra.core.parcellation)
parse() (siibra.locations.Point static method)
(siibra.locations.point.Point static method)
(siibra.Point static method)
parse_from_region() (siibra.core.region.RegionRelationAssessments class method)
parse_id_arg() (siibra.core.region.RegionRelationAssessments static method)
parse_relation_assessment() (siibra.core.assignment.Qualification static method)
parse_relationship_assessment() (siibra.core.region.RegionRelationAssessments class method)
parse_tsv_data() (siibra.features.tabular.receptor_density_fingerprint.ReceptorDensityFingerprint class method)
(siibra.features.tabular.receptor_density_profile.ReceptorDensityProfile class method)
(siibra.features.tabular.ReceptorDensityFingerprint class method)
(siibra.features.tabular.ReceptorDensityProfile class method)
ParseCompoundFeatureIdException
ParseLiveQueryIdException
Patch (class in siibra.experimental)
(class in siibra.experimental.patch)
Plane3D (class in siibra.experimental)
(class in siibra.experimental.plane3d)
PLIVolumeOfInterest (class in siibra.features.image)
(class in siibra.features.image.volume_of_interest)
plot() (siibra.features.connectivity.regional_connectivity.RegionalConnectivity method)
(siibra.features.Feature method)
(siibra.features.feature.CompoundFeature method)
(siibra.features.feature.Feature method)
(siibra.features.tabular.cortical_profile.CorticalProfile method)
(siibra.features.tabular.gene_expression.GeneExpressions method)
(siibra.features.tabular.GeneExpressions method)
(siibra.features.tabular.receptor_density_fingerprint.ReceptorDensityFingerprint method)
(siibra.features.tabular.ReceptorDensityFingerprint method)
(siibra.features.tabular.regional_timeseries_activity.RegionalTimeseriesActivity method)
(siibra.features.tabular.tabular.Tabular method)
plot_carpet() (siibra.features.tabular.regional_timeseries_activity.RegionalTimeseriesActivity method)
Point (class in siibra)
(class in siibra.locations)
(class in siibra.locations.point)
PointSet (class in siibra)
(class in siibra.locations)
(class in siibra.locations.pointset)
polar_plot() (siibra.features.tabular.receptor_density_fingerprint.ReceptorDensityFingerprint method)
(siibra.features.tabular.ReceptorDensityFingerprint method)
poly_rev() (siibra.features.tabular.cell_density_profile.CellDensityProfile static method)
(siibra.features.tabular.CellDensityProfile static method)
poly_srt() (siibra.features.tabular.cell_density_profile.CellDensityProfile static method)
(siibra.features.tabular.CellDensityProfile static method)
PolyLine (class in siibra.commons)
post_process() (in module siibra.explorer.util)
prev() (siibra.volumes.providers.neuroglancer.NeuroglancerScale method)
profile_labels (siibra.livequeries.bigbrain.WagstylProfileLoader property)
PROFILES_FILE_LEFT (siibra.livequeries.bigbrain.WagstylProfileLoader attribute)
project_points() (siibra.experimental.Plane3D method)
(siibra.experimental.plane3d.Plane3D method)
providers (siibra.volumes.Volume property)
(siibra.volumes.volume.Volume property)
provides() (siibra.commons.InstanceTable method)
(siibra.vocabularies.InstanceTable method)
provides_image (siibra.core.space.Space property)
(siibra.volumes.Map property)
(siibra.volumes.parcellationmap.Map property)
(siibra.volumes.Volume property)
(siibra.volumes.volume.Volume property)
provides_mesh (siibra.core.space.Space property)
(siibra.volumes.Map property)
(siibra.volumes.parcellationmap.Map property)
(siibra.volumes.Volume property)
(siibra.volumes.volume.Volume property)
publications (siibra.core.concept.AtlasConcept property)
Q
Qualification (class in siibra.core.assignment)
qualification (siibra.core.assignment.AnatomicalAssignment attribute)
query() (siibra.experimental.cortical_profile_sampler.CorticalProfileSampler method)
(siibra.experimental.CorticalProfileSampler method)
(siibra.livequeries.allen.AllenBrainAtlasQuery method)
(siibra.livequeries.AllenBrainAtlasQuery method)
(siibra.livequeries.bigbrain.BigBrainProfileQuery method)
(siibra.livequeries.bigbrain.LayerwiseBigBrainIntensityQuery method)
(siibra.livequeries.BigBrainProfileQuery method)
(siibra.livequeries.ebrains.EbrainsFeatureQuery method)
(siibra.livequeries.EbrainsFeatureQuery method)
(siibra.livequeries.LayerwiseBigBrainIntensityQuery method)
(siibra.livequeries.query.LiveQuery method)
QUERY_ID (siibra.retrieval.EbrainsPublicDatasetConnector attribute)
(siibra.retrieval.repositories.EbrainsPublicDatasetConnector attribute)
(siibra.retrieval.repositories.EbrainsPublicDatasetConnectorMinds attribute)
query_structure (siibra.core.assignment.AnatomicalAssignment attribute)
QUIET (in module siibra)
(in module siibra.commons)
R
RATTUS_NORVEGICUS (siibra.commons.Species attribute)
read_as_bytesio() (in module siibra.retrieval.requests)
reassign_union() (in module siibra.locations)
receptor_fullname (siibra.features.tabular.receptor_density_profile.ReceptorDensityProfile property)
(siibra.features.tabular.ReceptorDensityProfile property)
RECEPTOR_SYMBOLS (in module siibra.vocabularies)
ReceptorDensityFingerprint (class in siibra.features.tabular)
(class in siibra.features.tabular.receptor_density_fingerprint)
ReceptorDensityProfile (class in siibra.features.tabular)
(class in siibra.features.tabular.receptor_density_profile)
receptors (siibra.features.tabular.receptor_density_fingerprint.ReceptorDensityFingerprint property)
(siibra.features.tabular.ReceptorDensityFingerprint property)
REGEX_TYPE (in module siibra.core.region)
Region (class in siibra.core.region)
REGION_ALIASES (in module siibra.vocabularies)
region_aliases (siibra.features.anchor.AnatomicalAnchor property)
RegionalBOLD (class in siibra.features.tabular)
(class in siibra.features.tabular.regional_timeseries_activity)
RegionalConnectivity (class in siibra.features.connectivity.regional_connectivity)
RegionalTimeseriesActivity (class in siibra.features.tabular.regional_timeseries_activity)
RegionRelationAssessments (class in siibra.core.region)
regions (siibra.features.anchor.AnatomicalAnchor property)
(siibra.volumes.Map property)
(siibra.volumes.parcellationmap.Map property)
register_cleanup() (siibra.configuration.Configuration class method)
(siibra.configuration.configuration.Configuration class method)
register_warmup_fn() (siibra.retrieval.cache.Warmup class method)
(siibra.Warmup class method)
registry() (siibra.core.concept.AtlasConcept class method)
REMOVE_FROM_NAME (in module siibra.commons)
render_ascii_tree() (in module siibra.features)
render_tree() (siibra.core.region.Region method)
REPLACE_IN_NAME (in module siibra.commons)
REPO (siibra.livequeries.bigbrain.WagstylProfileLoader attribute)
RepositoryConnector (class in siibra.retrieval.repositories)
represented_parcellations() (siibra.features.anchor.AnatomicalAnchor method)
requests (siibra.retrieval.requests.MultiSourcedRequest attribute)
res_mm (siibra.volumes.providers.neuroglancer.NeuroglancerScale property)
resample_img_to_img() (in module siibra.commons)
resolves() (siibra.volumes.providers.neuroglancer.NeuroglancerScale method)
ROOT_DIR (in module siibra.commons)
RT_DIR (in module siibra.vocabularies)
run_maintenance() (siibra.retrieval.cache.Cache method)
runtime_path() (in module siibra.vocabularies)
S
sample() (siibra.commons.PolyLine method)
sample_locations() (siibra.volumes.Map method)
(siibra.volumes.parcellationmap.Map method)
sanitize_id() (in module siibra.explorer.url)
save_sparseindex() (siibra.volumes.sparsemap.SparseMap method)
scales (siibra.volumes.providers.neuroglancer.NeuroglancerVolume property)
search_files() (siibra.retrieval.EbrainsHdgConnector method)
(siibra.retrieval.EbrainsPublicDatasetConnector method)
(siibra.retrieval.GitlabConnector method)
(siibra.retrieval.LocalFileRepository method)
(siibra.retrieval.OwncloudConnector method)
(siibra.retrieval.repositories.EbrainsHdgConnector method)
(siibra.retrieval.repositories.EbrainsPublicDatasetConnector method)
(siibra.retrieval.repositories.EbrainsPublicDatasetConnectorMinds method)
(siibra.retrieval.repositories.GithubConnector method)
(siibra.retrieval.repositories.GitlabConnector method)
(siibra.retrieval.repositories.LocalFileRepository method)
(siibra.retrieval.repositories.OwncloudConnector method)
(siibra.retrieval.repositories.RepositoryConnector method)
(siibra.retrieval.repositories.ZipfileConnector method)
(siibra.retrieval.requests.GitlabProxyEnum method)
(siibra.retrieval.ZipfileConnector method)
separator (in module siibra.explorer.util)
set_cache_size() (in module siibra)
set_ebrains_token (in module siibra)
set_feasible_download_size() (in module siibra)
set_log_level() (in module siibra)
(in module siibra.commons)
set_token() (siibra.retrieval.EbrainsRequest class method)
(siibra.retrieval.requests.EbrainsRequest class method)
shape (siibra.features.tabular.cell_density_profile.CellDensityProfile property)
(siibra.features.tabular.CellDensityProfile property)
(siibra.locations.BoundingBox property)
(siibra.locations.boundingbox.BoundingBox property)
(siibra.volumes.providers.neuroglancer.NeuroglancerVolume property)
(siibra.volumes.sparsemap.SparseMap property)
shift() (siibra.locations.BoundingBox method)
(siibra.locations.boundingbox.BoundingBox method)
sidedness() (siibra.experimental.Plane3D method)
(siibra.experimental.plane3d.Plane3D method)
sigma (siibra.locations.PointSet property)
(siibra.locations.pointset.PointSet property)
(siibra.PointSet property)
siibra
module
siibra.commons
module
,
[1]
siibra.configuration
module
,
[1]
siibra.configuration.configuration
module
siibra.configuration.factory
module
siibra.core
module
,
[1]
siibra.core.assignment
module
,
[1]
siibra.core.atlas
module
,
[1]
siibra.core.concept
module
,
[1]
siibra.core.parcellation
module
,
[1]
siibra.core.region
module
,
[1]
siibra.core.space
module
,
[1]
siibra.core.structure
module
,
[1]
siibra.exceptions
module
,
[1]
siibra.experimental
module
,
[1]
siibra.experimental.contour
module
siibra.experimental.cortical_profile_sampler
module
siibra.experimental.patch
module
siibra.experimental.plane3d
module
siibra.explorer
module
,
[1]
siibra.explorer.url
module
siibra.explorer.util
module
siibra.features
module
,
[1]
siibra.features.anchor
module
,
[1]
siibra.features.connectivity
module
,
[1]
siibra.features.connectivity.functional_connectivity
module
siibra.features.connectivity.regional_connectivity
module
siibra.features.connectivity.streamline_counts
module
siibra.features.connectivity.streamline_lengths
module
siibra.features.connectivity.tracing_connectivity
module
siibra.features.dataset
module
,
[1]
siibra.features.dataset.ebrains
module
siibra.features.feature
module
,
[1]
siibra.features.image
module
,
[1]
siibra.features.image.image
module
siibra.features.image.sections
module
siibra.features.image.volume_of_interest
module
siibra.features.tabular
module
,
[1]
siibra.features.tabular.bigbrain_intensity_profile
module
siibra.features.tabular.cell_density_profile
module
siibra.features.tabular.cortical_profile
module
siibra.features.tabular.gene_expression
module
siibra.features.tabular.layerwise_bigbrain_intensities
module
siibra.features.tabular.layerwise_cell_density
module
siibra.features.tabular.receptor_density_fingerprint
module
siibra.features.tabular.receptor_density_profile
module
siibra.features.tabular.regional_timeseries_activity
module
siibra.features.tabular.tabular
module
siibra.livequeries
module
,
[1]
siibra.livequeries.allen
module
,
[1]
siibra.livequeries.bigbrain
module
,
[1]
siibra.livequeries.ebrains
module
,
[1]
siibra.livequeries.query
module
,
[1]
siibra.locations
module
,
[1]
siibra.locations.boundingbox
module
,
[1]
siibra.locations.location
module
,
[1]
siibra.locations.point
module
,
[1]
siibra.locations.pointset
module
,
[1]
siibra.retrieval
module
,
[1]
siibra.retrieval.cache
module
,
[1]
siibra.retrieval.datasets
module
,
[1]
siibra.retrieval.exceptions
module
,
[1]
siibra.retrieval.repositories
module
,
[1]
siibra.retrieval.requests
module
,
[1]
siibra.vocabularies
module
,
[1]
siibra.volumes
module
,
[1]
siibra.volumes.parcellationmap
module
,
[1]
siibra.volumes.providers
module
,
[1]
siibra.volumes.providers.freesurfer
module
siibra.volumes.providers.gifti
module
siibra.volumes.providers.neuroglancer
module
siibra.volumes.providers.nifti
module
siibra.volumes.providers.provider
module
siibra.volumes.sparsemap
module
,
[1]
siibra.volumes.volume
module
,
[1]
SIIBRA_CACHEDIR (in module siibra.commons)
SIIBRA_DEFAULT_MAP_THRESHOLD (in module siibra.commons)
SIIBRA_DEFAULT_MAPTYPE (in module siibra.commons)
SIIBRA_LOG_LEVEL (in module siibra.commons)
SIIBRA_MAX_FETCH_SIZE_GIB (in module siibra.commons)
siibra_tqdm() (in module siibra.commons)
(in module siibra.features)
SIIBRA_USE_CONFIGURATION (in module siibra.commons)
SIIBRA_USE_LOCAL_SNAPSPOT (in module siibra.commons)
SiibraHttpRequestError
,
[1]
size (siibra.retrieval.cache.Cache property)
SIZE_GIB (siibra.retrieval.cache.Cache attribute)
SKIP_CACHEINIT_MAINTENANCE (in module siibra.commons)
snake2camel() (in module siibra.commons)
Space (class in siibra.core.space)
space (siibra.core.region.SpatialProp attribute)
(siibra.experimental.Patch property)
(siibra.experimental.patch.Patch property)
(siibra.features.anchor.AnatomicalAnchor property)
(siibra.features.image.image.ImageAnchor property)
(siibra.locations.Location property)
(siibra.locations.location.Location property)
(siibra.volumes.Map property)
(siibra.volumes.parcellationmap.Map property)
(siibra.volumes.Volume property)
(siibra.volumes.volume.Volume property)
spaces (siibra.core.atlas.Atlas property)
(siibra.core.region.Region property)
SPACEWARP_IDS (siibra.locations.Location attribute)
(siibra.locations.location.Location attribute)
SPACEWARP_SERVER (siibra.locations.Location attribute)
(siibra.locations.location.Location attribute)
SpaceWarpingFailedError
sparse_index (siibra.volumes.sparsemap.SparseMap property)
SparseIndex (class in siibra.volumes.sparsemap)
SparseMap (class in siibra.volumes.sparsemap)
spatial_props() (siibra.core.region.Region method)
SpatialProp (class in siibra.core.region)
SpatialPropCmpt (class in siibra.core.region)
Species (class in siibra.commons)
species (siibra.core.concept.AtlasConcept property)
(siibra.core.region.Region property)
(siibra.livequeries.allen.AllenBrainAtlasQuery attribute)
(siibra.livequeries.AllenBrainAtlasQuery attribute)
(siibra.locations.Location property)
(siibra.locations.location.Location property)
(siibra.volumes.Map property)
(siibra.volumes.parcellationmap.Map property)
(siibra.volumes.Volume property)
(siibra.volumes.volume.Volume property)
STATISTICAL (siibra.commons.MapType attribute)
(siibra.MapType attribute)
StreamlineCounts (class in siibra.features.connectivity)
(class in siibra.features.connectivity.streamline_counts)
StreamlineLengths (class in siibra.features.connectivity)
(class in siibra.features.connectivity.streamline_lengths)
subject (siibra.features.connectivity.regional_connectivity.RegionalConnectivity property)
(siibra.features.tabular.regional_timeseries_activity.RegionalTimeseriesActivity property)
Subvolume (class in siibra.volumes.volume)
SubvolumeProvider (class in siibra.volumes.providers.provider)
SubvolumeProvider.UseCaching (class in siibra.volumes.providers.provider)
SUPPORTED_FORMATS (siibra.volumes.Volume attribute)
(siibra.volumes.volume.Volume attribute)
supported_prefix (in module siibra.explorer.url)
supported_spaces (siibra.core.region.Region property)
supports_space() (siibra.core.region.Region method)
T
T (in module siibra.commons)
(in module siibra.core.assignment)
(in module siibra.core.concept)
Tabular (class in siibra.features.tabular.tabular)
TagNotFoundException
,
[1]
TEST (siibra.retrieval.cache.WarmupLevel attribute)
(siibra.WarmupLevel attribute)
THICKNESSES_FILE_LEFT (siibra.livequeries.bigbrain.WagstylProfileLoader attribute)
THRESHOLD_STATISTICAL_MAPS (in module siibra.core.region)
to_sparse() (siibra.volumes.Map method)
(siibra.volumes.parcellationmap.Map method)
to_zip() (siibra.features.Feature method)
(siibra.features.feature.Feature method)
TracingConnectivity (class in siibra.features.connectivity)
(class in siibra.features.connectivity.tracing_connectivity)
transform() (siibra.locations.BoundingBox method)
(siibra.locations.boundingbox.BoundingBox method)
(siibra.locations.Location method)
(siibra.locations.location.Location method)
(siibra.locations.Point method)
(siibra.locations.point.Point method)
(siibra.locations.PointSet method)
(siibra.locations.pointset.PointSet method)
(siibra.Point method)
(siibra.PointSet method)
(siibra.volumes.Volume method)
(siibra.volumes.volume.Volume method)
transform_nm (siibra.volumes.providers.neuroglancer.NeuroglancerVolume property)
translate_cae() (siibra.core.region.RegionRelationAssessments class method)
translate_pes() (siibra.core.region.RegionRelationAssessments class method)
translate_pevs() (siibra.core.region.RegionRelationAssessments class method)
translation_matrix() (in module siibra.commons)
tree2str() (siibra.core.region.Region method)
try_all_connectors() (in module siibra.retrieval.requests)
TypeDataset (in module siibra.core.concept)
(in module siibra.features.feature)
(in module siibra.volumes.volume)
TypePublication (class in siibra.commons)
TYPES (in module siibra.features)
U
unify_stringlist() (in module siibra.commons)
union() (siibra.locations.Location static method)
(siibra.locations.location.Location static method)
(siibra.volumes.Volume method)
(siibra.volumes.volume.Volume method)
unit (siibra.features.tabular.cortical_profile.CorticalProfile property)
(siibra.features.tabular.receptor_density_fingerprint.ReceptorDensityFingerprint property)
(siibra.features.tabular.receptor_density_profile.ReceptorDensityProfile property)
(siibra.features.tabular.ReceptorDensityFingerprint property)
(siibra.features.tabular.ReceptorDensityProfile property)
UNSPECIFIED_SPECIES (siibra.commons.Species attribute)
url (siibra.commons.TypePublication attribute)
(siibra.features.dataset.ebrains.EbrainsDataFeature property)
(siibra.features.dataset.EbrainsDataFeature property)
(siibra.retrieval.datasets.EbrainsDatasetUrl attribute)
urls (siibra.core.concept.AtlasConcept property)
(siibra.features.Feature property)
(siibra.features.feature.Feature property)
(siibra.retrieval.datasets.EbrainsBaseDataset property)
(siibra.retrieval.datasets.EbrainsDataset property)
(siibra.retrieval.datasets.EbrainsV3Dataset property)
(siibra.retrieval.datasets.EbrainsV3DatasetVersion property)
(siibra.retrieval.datasets.GenericDataset property)
USE_CACHE (siibra.volumes.providers.neuroglancer.NeuroglancerVolume attribute)
use_configuration() (siibra.configuration.Configuration class method)
(siibra.configuration.configuration.Configuration class method)
USER_AGENT_HEADER (in module siibra.retrieval.requests)
V
values() (siibra.commons.InstanceTable method)
(siibra.vocabularies.InstanceTable method)
variants (siibra.volumes.providers.gifti.GiftiMesh property)
(siibra.volumes.providers.GiftiMesh property)
verb (siibra.core.assignment.Qualification property)
VERBOSE (in module siibra)
(in module siibra.commons)
VERSION_BLACKLIST_WORDS (in module siibra.core.atlas)
version_changelog (siibra.retrieval.datasets.EbrainsV3DatasetVersion property)
version_history (siibra.features.dataset.ebrains.EbrainsDataFeature property)
(siibra.features.dataset.EbrainsDataFeature property)
version_identifier (siibra.features.dataset.ebrains.EbrainsDataFeature property)
(siibra.features.dataset.EbrainsDataFeature property)
(siibra.retrieval.datasets.EbrainsV3DatasetVersion property)
version_ids (siibra.retrieval.datasets.EbrainsV3Dataset property)
VERSION_PATTERN (siibra.livequeries.ebrains.EbrainsFeatureQuery attribute)
(siibra.livequeries.EbrainsFeatureQuery attribute)
Volume (class in siibra.volumes)
(class in siibra.volumes.volume)
volume (siibra.core.region.SpatialPropCmpt attribute)
(siibra.locations.BoundingBox property)
(siibra.locations.boundingbox.BoundingBox property)
(siibra.locations.Point property)
(siibra.locations.point.Point property)
(siibra.locations.PointSet property)
(siibra.locations.pointset.PointSet property)
(siibra.Point property)
(siibra.PointSet property)
(siibra.volumes.parcellationmap.MapAssignment attribute)
VolumeData (in module siibra.volumes.providers.provider)
VolumeProvider (class in siibra.volumes.providers.provider)
W
WagstylProfileLoader (class in siibra.livequeries.bigbrain)
want_commit (siibra.retrieval.GitlabConnector property)
(siibra.retrieval.repositories.GitlabConnector property)
warm_cache() (in module siibra)
Warmup (class in siibra)
(class in siibra.retrieval.cache)
warmup() (siibra.retrieval.cache.Warmup class method)
(siibra.Warmup class method)
WarmupLevel (class in siibra)
(class in siibra.retrieval.cache)
WarmupParam (class in siibra.retrieval.cache)
WarmupRegException
warp() (siibra.locations.BoundingBox method)
(siibra.locations.boundingbox.BoundingBox method)
(siibra.locations.Location method)
(siibra.locations.location.Location method)
(siibra.locations.Point method)
(siibra.locations.point.Point method)
(siibra.locations.PointSet method)
(siibra.locations.pointset.PointSet method)
(siibra.Point method)
(siibra.PointSet method)
(siibra.volumes.Volume method)
(siibra.volumes.volume.Volume method)
weighted_mean_of_first (siibra.commons.CompareMapsResult attribute)
weighted_mean_of_second (siibra.commons.CompareMapsResult attribute)
X
XPCTVolumeOfInterest (class in siibra.features.image)
(class in siibra.features.image.volume_of_interest)
Y
y_rotation_matrix() (in module siibra.commons)
Z
ZipContainedNiftiProvider (class in siibra.volumes.providers.nifti)
zipfile (siibra.retrieval.repositories.ZipfileConnector property)
(siibra.retrieval.ZipfileConnector property)
ZipfileConnector (class in siibra.retrieval)
(class in siibra.retrieval.repositories)
ZipfileConnector.ZipFileLoader (class in siibra.retrieval)
(class in siibra.retrieval.repositories)
ZipfileRequest (class in siibra.retrieval)
(class in siibra.retrieval.requests)
ZippedFreesurferAnnot (class in siibra.volumes.providers)
(class in siibra.volumes.providers.freesurfer)
zoom() (siibra.locations.BoundingBox method)
(siibra.locations.boundingbox.BoundingBox method)
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